Silicone turbo to intercooler pipes are nice, and would still be used if you chose to go the FMIC route. http://clubsub.org.nz/forum/showthread.php?39580-TT-TMIC-pipe-upgrade-revision-3
Hose 1 mod, boost loss during VOD is reduced by adding a restrictor pill into hose 1. Personally after driving with a parallel setup then going straight to a sequential setup with the hose 1 mod, I prefer it stock. Yes boost loss is more dramatic but my pants seat-o meter likes it more once the secondary starts boosting as well. http://clubsub.org.nz/forum/showthread.php?40911-Inside-the-BBOD
Are you sure it's a vf28 and not a vf26?
Edit: And hose 10 mod is a gen 3 thing. 2nd gen's already have the bov line going straight from the manifold to bov/bpv.